Präsidium und Senat der Friedrich-Schiller-Universität Jena haben sich zum Ziel gesetzt, alle Nachteile, die Studierenden durch Corona entstehen, auszugleichen. The political actors therefore donât stop at their borders on the search for solutions. Among them is the ACP auditorium, where main lectures in the M.Sc. ��-�X+�rO��4��L`-�K���L��Z2(
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���G�p>�vw�}��O SARS-CoV-2 release is coming (May, 1st). Its main focus is set on drug interactions either addressing viral proteins or human proteins that could be used to treat COVID. The ELM resource offers a collection of short linear motifs that mediate interactions crucial in both native cell regulation and pathogenic interference. Coronavirus COVID-19 Global Cases by the Center for Systems Science and Engineering (CSSE) at Johns Hopkins University (JHU) Please also use the e-mail address corona@jena.de. The P-HIPSTer database, comprised of ∼282,000 PPIs, represents a comprehensive catalog of virus-human PPIs that spans the Baltimore classification system and is a major expansion on previously available or reported pathogen-host interactions. If you wish to start a PhD at the University of Jena you have to register in the portal with your personal data. Corona-News: Thüringer mit medizinischer Erfahrung gesucht - Jena meldet Rekordwert 36 Menschen, die mit dem Coronavirus infiziert waren, sind innerhalb eines Tages in Thüringen verstorben. Henceforth, it is possible to proceed the studies or to start the studies without being physically in Jena. Since the start of the COVID-19 outbreak and the identification of the pandemic virus, laboratories around the world are generating viral genome sequence data with unprecedented speed, enabling real-time progress in the understanding of the new disease and in the research and development of candidate medical countermeasures. I look forward to meeting you â online and in person. And we will overcome them, together. Internalized ACE2 receptors release their virus cargo and are recycled back to the surface. The COVID-19 portal enables community crowdsourcing of publications via the “Add a publication” feature within any entry. The annotation system is based on the analysis of the input nucleotide sequence using models built from curated RefSeqs. ViralZone is a web-resource from the Swiss Institute of Bioinformatics for all viral genus and families, providing general molecular and epidemiological information, along with virion and genome figures. The Welcome and Service Desk for Doctoral Candidates and Postdocs will be closed for face-to-face contacts until further notice. ELM and IUPred2A mutually include each other’s predictions, and both methods utilize the newest data from UniProt and Pfam. You can search the comprehensive database for sequences & strains, immune epitopes, 3D protein structures, host factor data, antiviral drugs, plasmid data. We cover workflows and tools for. Indeed, this tree has never borne so much fruit, and so superb. The latest release of Pfam, version 33.1, contains an updated set of models that comprehensively cover the proteins encoded by SARS-CoV-2. Step-by-step guide. However, tracking these changes will help us better understand the virus pandemic. International Organizations and Crisis Management - IOCM in short - is the masters degree in political science of the Chair for International Relations at the Friedrich-Schiller-University Jena. ���n1�P�G�,�t\5t����W Qe�.f�R��L�)��#��!sߐQbs�k�+�f���Hj�"z�c��?��NT���I�O ִ� "doc-in" is the online administration for doctoral procedures at the Friedrich Schiller University Jena and accompanies you through the entire PhD phase. ORCID is used as a mechanism to validate user credentials as well as recognition for contribution. Please also have a look at our general list of virus bioinformatics tools. Dazu wurden verschiedene Regelungen getroffen bzw. uni-assist has already taken comprehensive protective measures for the staff in its Berlin office. COPASI is a software application for simulation and analysis of biochemical networks and their dynamics. � �]{s�F��ۮ�w���Yr�|ʒE�ϖ��[��=)��Km��� ��3R��~���A"H�q��� ������|�7ή���̵�>q��;���j����3�w�k6�pay��9�˥J�;��^��bԆ��4�:貏!_�;��5�uW�T�ݸ�٭���5�R1=���m�E'��S$�LY���/�4eS*~�VK!m�IY)�BW���n�΄�eY!���
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�*�y+9�%���Қs�e���s0���0�&(��/����3�M��8�(��:U:OLp�u�lad�q���0g6�M}��˭�q�����v�=|� �/��77�$ VirHostNet is a knowledge base for the management and the analysis of proteome-wide virus-host interaction networks. Nextstrain is an open-source project to harness the scientific and public health potential of pathogen genome data. 4Institute for Pharmaceutical Technology and Biopharmacy, Friedrich Schiller University Jena, Lessingstrasse 8, 07743 Jena. ,)�t*�;ʖVq����w���p6ʯQ73�c��8k9O>X3̪? The latest 2020 release of ELM includes updated motif definitions and new instances covering nearly 300 motif classes based on over 3,400 publications. Matthias C. Kettemann Oral examinations in the context of doctoral and habilitation procedures (disputations, colloquia, scientific lectures and talks) are currently not to be held. On average the observed changes would be expected to have no or minimal consequence on virus biology. BEAST 2 is a cross-platform program for Bayesian phylogenetic analysis of molecular sequences. You can find more information at: iocm.uni-jena.de. Users may also analyse their own SARS-CoV-2 sequences by submitting them to the web application to receive an interactive report containing visualisations of phylogenetic classification and highlighting genomic variation of potentially high impact, for example, linked to primer mismatches. The tool allows users to highlight and prioritize the most frequent mutations in specific protein regions, and to monitor their frequency in the population over time. The new search uses nhmmer and enables the users to explore the results using facets powered by the EBI Search. [8r�vJ�b���������/9����b_�R�ͅkcz���׃�/��0M�o}yi���R�ɚ
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�_��F���jU� DisGeNET COVID-19 data collection shows the results of applying text mining tools to the LitCovid dataset, to identify mentions of diseases, signs and symptoms. PriSeT has been applied to 19 SARS-CoV-2 genomes and computed 114 new primer pairs with the additional constraint that the sequences have no co-occurrences in other taxa. With great discipline we have all contributed to keep the number of sick people in Jena low. The tool allows a fast classification in pre-defined clusters (from the Nextstrain database). Beautiful, sweet-smelling, delicious apples. It estimates rooted, time-measured phylogenies using strict or relaxed molecular clock models. information on gene functions from Gene Ontology, Support for facets and keyword searches for exploring results, Explore up to 1,000 top hits (compared to 100 in BLAST), Integration with Rfam to annotate structured RNA elements. This literature curation effort is now, Complete the online application form providing answers as directed Ensure you add relevant information to the “Application submission” section where you are asked to provide three 100-word paragraphs that cover your: scientific biography work history current research interests Upload a letter of support from your supervisor or a senior colleague, Complete the online application form Ensure you add relevant information to the “application submission” section where you are asked to provide three 100-word paragraphs that cover your: scientific biography work history current research interests Upload a letter of support from your supervisor or a senior colleague detailing reasons why you should be selected, International Virus Bioinformatics Meeting 2020, SARS-CoV-2 genome browser and related resources, Phylogeographic reconstruction using air transportation data. It is capable of processing large libraries and is robust against mislabeled or low quality references. Rufen Sie in jedem Fall Ihren Hausarzt in Deutschland (alternativ die Hotline 116117) an. This heavy usage might lead to bottlenecks when it comes to setting up new meetings, or to disruptions when starting meetings. 14.3k Followers, 294 Following, 894 Posts - See Instagram photos and videos from Universität Jena (@unijena) CoVex is a unique online network and systems medicine platform for data analysis that integrates virus-human interactions for SARS-CoV-2 and SARS-CoV-1. The LitCovid dataset contains a selection of papers referring to Coronavirus 19 disease. the tracking of the COVID-19 pandemic and evaluation of containment measures. Photonics course are held, e.g. If anything, the Corona crisis forces us to be creative about our teaching. Lectures during Corona. Handlungsempfehlungen an Lehrende und Prüfungsämter kommuniziert, auf die sich Studierende berufen können. At the same time, the DNA barcodes between primer pairs should be different to allow us to distinguish between species to improve resolution. 07743 Jena. Covidex is an alignment-free machine learning subtyping tool for viral species, based on a random forest model trained over a kmer database. the Fundamentals of Modern Optics and the Structure of Matter courses. They provide a continually-updated view of publicly available data alongside powerful analytic and visualization tools for use by the community. The pipeline is designed for reproducibility and scalability in order to ensure reliable and fast data analysis of SARS-CoV2 data. the routine detection of SARS-CoV-2 infection. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. There may be longer waiting times. Find putative drug targets. The Lecture Hall Management section will support you in complying with the protection regulations. Apoptosed cells release some or all of their internal contents, notably including virions. The Friedrich Schiller University Jena has equipped several lecture halls to provide live streaming of lectures and seminars. �:M�l��Μق��D�;];��#�%2�T�t��z$ ��M�l�H�h���F]��*Vwb�C�GܲCE�V�q���e�!�����
SD}��ٌ[:/�*F�Л��q�֙Xp�;��p�l�2�����Q/>~j�ܒcGIDP�?��u���B.S the discovery of potential drug targets and development of therapeutic strategies. This includes genetic sequence and related clinical and epidemiological data to help researchers understand how viruses evolve and spread during epidemics and pandemics. Vigor4 uses the VIGOR_DB project which currently has databases for the following viruses: Influenza (A & B for human, avian, and swine, and C for human), West Nile Virus, Zika Virus, Chikungunya Virus, Eastern Equine Encephalitis Virus, Respiratory Syncytial Virus, Rotavirus, Enterovirus, Lassa Mammarenavirus. PriSeT finds a primer set P balancing both: high taxonomic coverage and high resolution. It tackles the computationally expensive steps with linear runtime filters and efficient encodings. The COVID-19 UniProt portal advances SARS-CoV-2 research by providing the latest knowledge on proteins relevant to the disease for both the virus and human host. The ELM server includes an online tool for the identification of motifs in user input sequences, using context filters (based on structural information, localization, sequence complexity and conservation) to refine results. The Master's programme starts in the winter semester 2020. Sequence data are essential to design and evaluate diagnostic tests, to track and trace the ongoing outbreak, and to identify potential intervention options. Hier finden Sie wichtige Informationen, die Sie im Zusammenhang mit dem Coronavirus wissen sollten. Our team is mostly working online. Corona virus: Availability and Restrictions at Graduate Academy. Nextstrain is incorporating SARS-CoV-2 genomes as soon as they are shared and provides analyses and situation reports. The nationwide survey "Studying in Germany in Corona Times" aims to examine the effects of the crisis on students at German universities and to shed light on the special features, challenges and opportunities of the largely digital summer semester 2020. Visit the SARS-CoV-2 data portal in ViPR. The ViPR database integrates various types of data for multiple virus families. CORDITE (CORona Drug InTEractions database) collects and aggregates data from PubMed, MedRxiv, BioRxiv, and ChemRxiv for SARS-CoV-2. The University of Jena, officially the Friedrich Schiller University Jena (German: Friedrich-Schiller-Universität Jena, abbreviated FSU, shortened form Uni Jena) is a public research university located in Jena, Thuringia, Germany.. �dj��N�cswdQ�.^�)�2 Y3
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"��";2�]���"���]���'- Im Krankheitsfall/wenn Symptome auftreten: wenn Sie in Jena wohnen, müssen Sie die Corona-Hotline +49 3641 492222 und das Fiebertelefon +49 3641 493333 informieren (alternativ: corona@jena.de). Volle Transparenz. Ten publication submissions have been received so far, contributing to our understanding of the virus biology. Dezember 2020 . COVID-19 UniProt portal provides early pre-release access to (i) SARS-CoV-2 annotated protein sequences, (ii) closest SARS proteins from SARS 2003, (iii) human proteins relevant to the biology of viral infection, like receptors and enzymes, (iv) ProtVista visualisation of sequence features for each protein, (v) links to sequence analysis tools, (vi) access to collated community-contributed publications relevant to COVID-19, as well as (vii) links to relevant resources. The European COVID-19 Data Portal was launched by EMBL-EBI in conjunction with the European Commission, the European Open Science Cloud and ELIXIR, as part of the wider European COVID-19 Data Platform. 07743 Jena Telefon: Telefax: E-Mail: 0 36 41 9-431 70 0 36 41 9-431 72 studiendekanat-wiwi@uni-jena.de Jena, March 18, 2020 To the students and lecturers at the Faculty of Economics and Business Administration Information and Regulations Concerning the Corona Pandemic (last updated 18/03/2020) Dear Sir or Madam, Service hours of the hotline: daily 10:00 - 14:00. CoV-GLUE is an online web application for the interpretation and analysis of SARS-CoV-2 virus genome sequences, with a focus on amino acid sequence variation. Due to the corona virus, Graduate Academy has to reduce some of its offers. The Coronavirus typing tool is designed to use Blast and phylogenetic methods in order to identify the Coronavirus types and genotypes of a nucleotide sequence. (raumverwaltung@uni-jena.de) in good time â one week in advance as a rule â to discuss arrangements. Corona Hotline 0049 3641 49-2222. First Act. Hidden Markov models are used to classify sequences by determining the RefSeq they are most similar to, and feature annotation from the RefSeq is mapped based on a nucleotide alignment of the full sequence to a covariance model. For a detailed description of the tools, check our review preprint: We are curious to know which tools you have developed to advance the field. Barrierefreiheit. We are happy to answer your enquiries via our contact form. And our most important services will continue: We are processing all incoming applications including your mail. However, we are still available for you via email. Die Seite wird regelmäßig aktualisiert und erweitert. Please contact Marco Cacciabue, Pangolin assigns a global lineage to query SARS-CoV-2 genomes by estimating the most likely placement within a phylogenetic tree of representative sequences from all currently defined global SARS-CoV-2 lineages based on the lineage nomenclature proposed by. The latest release (March 2020) is dedicated to helping researchers to fight against the COVID-19 pandemic and is registered as a COVID-19 fair share resource. Essential information concerning this matter is ⦠Friedrich-Schiller-Universität Jena, Institut für Angewandte Physik (IAP), Max-Wien-Platz 1, D-07743 Jena E-mail: stefanie.deinhardt-emmer@med.uni-jena.de The opening page has been updated to give references to an overview of motif hijacking in viruses in general, and an application to detecting SARS-CoV-2 motif usage in host cell attachment and modulation. For example, it is possible to search for a fragment of a SARS-CoV-2 genome, select similar sequences identified in COVID-19 patients, and browse sequence variants from different countries. SARS-CoV-2 will naturally accumulate nucleotide mutations in its RNA genome as the pandemic progresses. Welcome to the Chair of International Relations at Friedrich Schiller University Jena! Corona News. The viral sequences are regularly extracted from the NCBI BLAST database and the metadata is retrieved from the associated INSDC entries. For the third year Bachelor Biology course âVom Molekül zu komplexen Gemeinschaften (BB3.Ö13)â at FSU Jena, PhD student Jennifer Gabriel and research group leader Nicole van Dam, Molecular Interaction Ecology designed a Corona proof âbrown bagâ practicum. It allows for the detection of within-host genetic variation of SARS-CoV-2 from viral NGS data. The IUPred2A server is a biophysics-based prediction to identify intrinsically disordered protein regions (IDRs) and binding sites inside IDRs. The European COVID-19 Data Portal was launched by EMBL-EBI in conjunction with the European Commission, the European Open Science Cloud and ELIXIR, as part of the wider European COVID-19 Data Platform. We will meet the challenges head-on. Please register as a doctoral candidate in the doctoral candidate portal "doc-in". Jena, July 2-3, 2020. The model includes a basic pharmacodynamic response (to assembled virions) to cause cell apoptosis. Please note: Due to the Corona crisis DFN-web conferencing tools are currently frequently used. p�$F�l�m����A U��t��S?��)��ͻZ�ݺc�������3�{ϥSGR�. These primer sets would be suitable for empirical testing. The goal is to aid epidemiological understanding and improve outbreak response. The Pfam protein families database is widely used in the field of molecular biology for large-scale functional annotation of proteins. Informatik II (B.Sc. ��$�i��D`��ATV��@������ZWʲ]��ض It will determine When I called him to say thank you, he calmly said: âAh, thatâs the radiation. This can capture longer and more specialized disordered interaction regions complementing linear motifs captured by ELM. ��%����SIG�{ ��jx���A���l���-���8%�ES�kk`�,�-�$�B�Tm{����L̃��xS�SEV��*e�.�Jlۄ����ֶ�"R\��V�2����1�Z�L��V�I��d��Z�Lʲ]Ȕض�i�9����) This is a fast-paced project with the COVID-19 Data Portal featuring relevant datasets from EMBL-EBI Data Resources including the European Nucleotide Archive (ENA), UniProt, Protein Data Bank in Europe (PDBe), the Electron Microscopy Data Bank (EMDB), Expression Atlas, ChEMBL, and Europe PMC. VADR (Viral Annotation DefineR) validates and annotates viral sequences in GenBank submissions. PoSeiDon is a pipeline to detect significant positively selected sites and possible recombination events in an alignment of multiple coding sequences. Es werden keine Daten im Hintergrund erhoben, jeder Scan-Vorgang ist für den Nutzer vollständig nachvollziehbar. Further you can analyze the data online using sequence alignment, phylogenetic tree reconstruction, sequence variation (SNP), metadata-driven comparative analysis and BLAST. ... âThe corona crisis is the epitome of a transboundary crisisâ All tools are freely available online, either through web applications or public code repositories. Letzter Stand: 16. The GISAID Initiative promotes the rapid sharing of data from the coronavirus causing COVID-19. Die Browser-basierte Lösun Medizin-Studierende oder Personen mit medizinischer Vorbildung, die sich engagieren möchten, können sich an Karsten Krohn vom Universitätsklinikum Jena Krohn@med.uni-jena.de wenden.
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